| MirGeneDB ID | Spt-Mir-19-P2a |
|---|---|
| Family name | MIR-19 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-19-P1a Spt-Mir-19-P2c |
| Orthologues | Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001394.1: 2548240-2548300 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-19-P2a) |
Mir-17-P1a
QEPC01001394.1: 2547642-2547702 [+]
UCSC
Ensembl
Mir-17-P2a QEPC01001394.1: 2547787-2547851 [+] UCSC Ensembl Mir-19-P1a QEPC01001394.1: 2547937-2547994 [+] UCSC Ensembl Mir-17-P4a QEPC01001394.1: 2548101-2548159 [+] UCSC Ensembl Mir-19-P2a QEPC01001394.1: 2548240-2548300 [+] UCSC Ensembl Mir-92-P1a QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl |
| Seed | GUGCAAA |
| Precursor (pre-Mir +30nt flank) |
UGUGAGUCAAGUGAACACUGUUCUCUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUACUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGACAAGUCAGUGAAAAAGUGGet precursor sequence |
| Structure | 10 20 30 40 50 UGUGAGUCAAGUGAACA----| CUC - - UC UGUAUG CUGUU UGGUUAGUUUUGCA GG UUUGCA CAGC \ GACGG GUCAGUCAAAACGU CC AAACGU GUCG A GUGAAAAAGUGACUGAACAGU^ U-- A U -- UCUCAU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Spt-Mir-19-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
|
| Mature sequence | Spt-Mir-19-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence
|
