MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-19-P2a1

Family name MIR-19 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-19b
Paralogues Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Dre-Mir-19-P2a2  Dre-Mir-19-P2c  Dre-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Xtr-Mir-19-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr1: 3297494-3297555 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a1)		 Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
GCGCUAUUUGACCUUGCUGGACCCCCGGUCAGUUUUGCUGGUUUGCAUUCAGCUUUUAAGACUGUGCGCUGUGCAAAUCCAUGCAAAACUGAUUGUGGCAGCACACUUCUUAAGCACUUGUU
Get precursor sequence
Structure
        10        20          30         40         50        60
GCGCUAUUUGACCUUGCUGGACC-  -             -   -|     UU    UUUUAA 
                        CC CGGUCAGUUUUGC UGG UUUGCA  CAGC      G
                        GG GUUAGUCAAAACG ACC AAACGU  GUCG      A
UUGUUCACGAAUUCUUCACACGAC  U             U   U^     --    CGUGUC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-19-P2a1_5p*
mirBase accessionMIMAT0003399
Sequence 
0- AGUUUUGCUGGUUUGCAUUCAGC -23
Get sequence
Mature sequence

Dre-Mir-19-P2a1_3p
mirBase accessionMIMAT0001783
Sequence 
39- UGUGCAAAUCCAUGCAAAACUGA -62
Get sequence
Proposed targets TargetScanFish: dre-miR-19b