Mir-19-P1c

MirGeneDB ID

Cmi-Mir-19-P1c

Family name

MIR-19 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P2a Cmi-Mir-19-P2b Cmi-Mir-19-P2c Cmi-Mir-19-P2d

Orthologues

Sto-Mir-19-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9595282-9595339 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1c)

Mir-92-P2c KI635856.1: 9594643-9594704 [-] UCSC Ensembl
Mir-92-P1c KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Mir-19-P2c KI635856.1: 9594951-9595013 [-] UCSC Ensembl
Mir-17-P4c KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Mir-19-P1c KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Mir-17-P2c KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Mir-17-P1c KI635856.1: 9595929-9595986 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UAAUGGCAUGGACUCUUGCAACUCUCUGCCAGUUUUGCAGUUUUGUACUACAGGAAGAAGUGACCUGUGCAAAUCUAUGCAAAACUGGUAGGGAACUGUACUACUGCUCAUUUUUAUG

Get precursor sequence

Structure

        10          20        30        40          50         
UAAUGGCAUGGACUCUU--   AC                 GU--|    ACU     AAGA 
                   GCA  UCUCUGCCAGUUUUGCA    UUUGU   ACAGG    \
                   UGU  AGGGAUGGUCAAAACGU    AAACG   UGUCC    A
GUAUUUUUACUCGUCAUCA   CA                 AUCU^    ---     AGUG 
      110       100        90        80        70           60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-19-P1c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGUUUUGUACUACAGG -24

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Mature sequence

Cmi-Mir-19-P1c_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGG -58

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