Mir-92-P1a

MirGeneDB ID

Sha-Mir-92-P1a

Family name

MIR-92 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-92-P1c Sha-Mir-92-P1d Sha-Mir-92-P2a Sha-Mir-92-P2c Sha-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

GL849858.1: 3486412-3486470 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-92-P1a GL849858.1: 3486412-3486470 [-] UCSC Ensembl
Mir-19-P2a GL849858.1: 3486529-3486590 [-] UCSC Ensembl
Mir-17-P4a GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Mir-19-P1a GL849858.1: 3486833-3486890 [-] UCSC Ensembl
Mir-17-P2a GL849858.1: 3486975-3487039 [-] UCSC Ensembl
Mir-17-P1a GL849858.1: 3487119-3487179 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AAUGUGGAAAAGUCAAACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUCUGUCUGUAGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGGCCGAACGAU

Get precursor sequence

Structure

        10          20        30        40        50         
AAUGUGGAAAAGUCAAA-  -| UUU  AC            C   U        GUGUC 
                  CC CC   CU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG UCA CGUUAUGA     G
UAGCAAGCCGGUGUUAGG  U^ UUU  GU            U   -        UGUCU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-92-P1a_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

Get sequence

Mature sequence

Sha-Mir-92-P1a_3p

mirBase accession

None

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence