MirGeneDB ID | Gmo-Mir-92-P1a1 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-92-2
|
Paralogues |
Gmo-Mir-92-P1a2
Gmo-Mir-92-P2c
Gmo-Mir-92-P2d
|
Orthologues |
Aca-Mir-92-P1a
Ami-Mir-92-P1a
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1a
Cel-Mir-92
Cfa-Mir-92-P1a
Cli-Mir-92-P1a
Cmi-Mir-92-P1a
Cpi-Mir-92-P1a
Cpo-Mir-92-P1a
Dno-Mir-92-P1a
Dre-Mir-92-P1a1
Esc-Mir-92
Ete-Mir-92-P1a
Gga-Mir-92-P1a
Gja-Mir-92-P1a
Hsa-Mir-92-P1a
Isc-Mir-92
Lch-Mir-92-P1a
Loc-Mir-92-P1a
Mal-Mir-92-P1a1
Mdo-Mir-92-P1a
Mml-Mir-92-P1a
Mmu-Mir-92-P1a
Mun-Mir-92-P1a
Obi-Mir-92
Ocu-Mir-92-P1a
Pbv-Mir-92-P1a
Rno-Mir-92-P1a
Sha-Mir-92-P1a
Sme-Mir-92
Spt-Mir-92-P1a
Sto-Mir-92-P1a
Tgu-Mir-92-P1a
Tni-Mir-92-P1a1
Xtr-Mir-92-P1a
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
scaffold07760: 2088-2144 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGGCGGUAUGACCUGUCCACUCCGUCACAGGUGGGGCCGAGCAGCAAUGCUGCGUAGCGACGGUAUUGCACUUGUCCCGGCCUGUGAAGGGGCUAGGAGAUAACCACUUUUCCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGGCGGUAUGACCUGU A--| G G C CA GCGU
CC CUCC UCACAGGU GGG CGAG GCAAUGCU A
GG GGGG AGUGUCCG CCC GUUC CGUUAUGG G
CUCCUUUUCACCAAUAGA AUC^ A G U A- CAGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Gmo-Mir-92-P1a1_5p* |
mirBase accession | MIMAT0044338 |
Sequence |
0- AGGUGGGGCCGAGCAGCAAUGCU -23
Get sequence
|
Mature sequence |
Gmo-Mir-92-P1a1_3p |
mirBase accession | MIMAT0044339 |
Sequence |
35- UAUUGCACUUGUCCCGGCCUGU -57
Get sequence
|