MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-92-P1a1

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-92-2
Paralogues Gmo-Mir-92-P1a2  Gmo-Mir-92-P2c  Gmo-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Xtr-Mir-92-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold07760: 2088-2144 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGGCGGUAUGACCUGUCCACUCCGUCACAGGUGGGGCCGAGCAGCAAUGCUGCGUAGCGACGGUAUUGCACUUGUCCCGGCCUGUGAAGGGGCUAGGAGAUAACCACUUUUCCUC
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Structure
        10        20          30        40        50        
GGGGGCGGUAUGACCUGU  A--|   G        G   C    CA        GCGU 
                  CC   CUCC UCACAGGU GGG CGAG  GCAAUGCU    A
                  GG   GGGG AGUGUCCG CCC GUUC  CGUUAUGG    G
CUCCUUUUCACCAAUAGA  AUC^   A        G   U    A-        CAGC 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-92-P1a1_5p*

mirBase accessionMIMAT0044338
Sequence
0- AGGUGGGGCCGAGCAGCAAUGCU -23
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Mature sequence

Gmo-Mir-92-P1a1_3p

mirBase accessionMIMAT0044339
Sequence
35- UAUUGCACUUGUCCCGGCCUGU -57
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