MirGeneDB ID | Loc-Mir-92-P1a |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-92-P1d
Loc-Mir-92-P2c
Loc-Mir-92-P2d
|
Orthologues |
Aca-Mir-92-P1a
Ami-Mir-92-P1a
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1a
Cel-Mir-92
Cfa-Mir-92-P1a
Cli-Mir-92-P1a
Cmi-Mir-92-P1a
Cpi-Mir-92-P1a
Cpo-Mir-92-P1a
Dno-Mir-92-P1a
Dre-Mir-92-P1a1
Dre-Mir-92-P1a2
Esc-Mir-92
Ete-Mir-92-P1a
Gga-Mir-92-P1a
Gja-Mir-92-P1a
Gmo-Mir-92-P1a1
Gmo-Mir-92-P1a2
Hsa-Mir-92-P1a
Isc-Mir-92
Lch-Mir-92-P1a
Mal-Mir-92-P1a1
Mal-Mir-92-P1a2
Mdo-Mir-92-P1a
Mml-Mir-92-P1a
Mmu-Mir-92-P1a
Mun-Mir-92-P1a
Oan-Mir-92-P1a5
Oan-Mir-92-P1a6
Oan-Mir-92-P1a7
Oan-Mir-92-P1a8
Obi-Mir-92
Ocu-Mir-92-P1a
Pbv-Mir-92-P1a
Rno-Mir-92-P1a
Sha-Mir-92-P1a
Sme-Mir-92
Spt-Mir-92-P1a
Sto-Mir-92-P1a
Tgu-Mir-92-P1a
Tni-Mir-92-P1a1
Tni-Mir-92-P1a2
Xla-Mir-92-P1a3
Xla-Mir-92-P1a4
Xtr-Mir-92-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG17: 12376738-12376796 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGCAGUGGUUCAGGGGUCCCUUUCUGUGCAGGUUGGGAUCAGUUGCAGUGCUGUUUAUUUGUAAGGUAUUGCACUUGUCCCGGCCUGUUGAGGACUAAGGGAAUUAAGCCACAAUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGCAGUGGUUCAGGGGUC -- GU-| C U GUUUA
CCUU UCU GCAGGUUGGGAU AGU GCAGUGCU U
GGAA AGG UGUCCGGCCCUG UCA CGUUAUGG U
UUUUAACACCGAAUUAAG- UC AGU^ U - AAUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-92-P1a_5p* |
mirBase accession | None |
Sequence |
0- AGGUUGGGAUCAGUUGCAGUGCU -23
Get sequence
|
Mature sequence |
Loc-Mir-92-P1a_3p |
mirBase accession | None |
Sequence |
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence
|