Mir-92-P1d

MirGeneDB ID

Loc-Mir-92-P1d

Family name

MIR-92 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-92-P1a Loc-Mir-92-P2c Loc-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG24: 7414062-7414124 [+] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GUCCCGCGCCCCCGGCUCCGACGGCCCGGCAGGUGUGGGAUGCAGUGCACUGUUGUCCGAUCUCCUCCCAAUAUUGCACUCGUCCCGGCCUCCCGGACCCUCGGGACACCACGCUCCGGGUUG

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Structure

        10          20        30        40        50        60  
GUCCCGCGCCCCCGGCU--|   C  C    C    G       C      C    GUCCGAU 
                   CCGA GG CCGG AGGU UGGGAUG AGUGCA UGUU       \
                   GGCU CC GGCC UCCG GCCCUGC UCACGU AUAA       C
GUUGGGCCUCGCACCACAG^   C  A    C    -       -      U    CCCUCCU 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGUGUGGGAUGCAGUGCACUGUU -24

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Mature sequence

Loc-Mir-92-P1d_3p

mirBase accession

None

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

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