MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-92b
Paralogues Xtr-Mir-92-P1a  Xtr-Mir-92-P1c  Xtr-Mir-92-P2a  Xtr-Mir-92-P2c  Xtr-Mir-92-P2d 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Hsa-Mir-92-P1d  Isc-Mir-92  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chrUn_NW_016684749v1: 25552-25614 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAUCGGGAUGUUGUGCACUGUUGUCCUUUCUCCUGCCAAUAUUGCACUCGUCCCGGCCUCC
Get precursor sequence
Structure
          10        20        30  
--|  A        UU     C     UCCUUU 
  AGG UCGGGAUG  GUGCA UGUUG      \
  UCC GGCCCUGC  CACGU AUAAC      C
CC^  -        U-     U     CGUCCU 
  60         50         40
Deep sequencing
CommentThe contig containing this gene is too short to include the extended pre-miRNA sequence.
3' NTU No
MotifsNo
Star sequence

Xtr-Mir-92-P1d_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGAUCGGGAUGUUGUGCACUGUU -24
Get sequence
Mature sequence

Xtr-Mir-92-P1d_3p

mirBase accessionMIMAT0003658
Sequence
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
Proposed targets TargetScanVert: xtr-miR-92b