| MirGeneDB ID | Xtr-Mir-92-P1d |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Tropical clawed frog (Xenopus tropicalis) |
| MiRBase ID | xtr-mir-92b |
| Paralogues | Xtr-Mir-92-P1a Xtr-Mir-92-P1c Xtr-Mir-92-P2a Xtr-Mir-92-P2c Xtr-Mir-92-P2d |
| Orthologues | Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (xenTro9_add) |
chrUn_NW_016684749v1: 25552-25614 [-] UCSC Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
AGGAUCGGGAUGUUGUGCACUGUUGUCCUUUCUCCUGCCAAUAUUGCACUCGUCCCGGCCUCCGet precursor sequence |
| Structure | 10 20 30 --| A UU C UCCUUU AGG UCGGGAUG GUGCA UGUUG \ UCC GGCCCUGC CACGU AUAAC C CC^ - U- U CGUCCU 60 50 40 |
| Deep sequencing | |
| Comment | The contig containing this gene is too short to include the extended pre-miRNA sequence. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Xtr-Mir-92-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGAUCGGGAUGUUGUGCACUGUU -24
Get sequence
|
| Mature sequence | Xtr-Mir-92-P1d_3p |
| mirBase accession | MIMAT0003658 |
| Sequence |
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
|
| Proposed targets |
TargetScanVert: xtr-miR-92b |
