MirGeneDB ID | Cpi-Mir-92-P1d |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-92b
|
Paralogues |
Cpi-Mir-92-P1a
Cpi-Mir-92-P1c
Cpi-Mir-92-P2a
Cpi-Mir-92-P2c
|
Orthologues |
Ami-Mir-92-P1d
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1d
Cel-Mir-92
Cfa-Mir-92-P1d
Cmi-Mir-92-P1d
Cpo-Mir-92-P1d
Dno-Mir-92-P1d
Dre-Mir-92-P1d
Esc-Mir-92
Ete-Mir-92-P1d
Gja-Mir-92-P1d
Hsa-Mir-92-P1d
Isc-Mir-92
Lch-Mir-92-P1d
Loc-Mir-92-P1d
Mal-Mir-92-P1d
Mdo-Mir-92-P1d
Mml-Mir-92-P1d
Mmu-Mir-92-P1d
Mun-Mir-92-P1d
Oan-Mir-92-P1d
Obi-Mir-92
Ocu-Mir-92-P1d
Pbv-Mir-92-P1d
Rno-Mir-92-P1d
Sha-Mir-92-P1d
Sme-Mir-92
Spt-Mir-92-P1d
Sto-Mir-92-P1d
Tgu-Mir-92-P1d
Xla-Mir-92-P1d1
Xla-Mir-92-P1d2
Xtr-Mir-92-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (chrPic1) |
JH584431: 3167271-3167333 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGGCUGCCAUCUCCUUCCAGGGCAGCAGGAGGGACGGGAUGCUGUGCAGUGUUGUUCUAUCACCAACCAAUAUUGCACUCGUCCCGGCCUCCUGCCUCCUUGGGCUCCUCCGCACCCAAGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCGGCUGCCAUCUCCUU--| CA GA CU GUUCUAU
CCAGGG GCAGGAGG CGGGAUG GUGCAGUGUU \
GGUUCC CGUCCUCC GCCCUGC CACGUUAUAA C
CGGAACCCACGCCUCCUCG^ UC G- U- CCAACCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cpi-Mir-92-P1d_5p* |
mirBase accession | MIMAT0037701 |
Sequence |
0- AGGGACGGGAUGCUGUGCAGUGUU -24
Get sequence
|
Mature sequence |
Cpi-Mir-92-P1d_3p |
mirBase accession | MIMAT0037702 |
Sequence |
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
|