MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-92-P1a  Ocu-Mir-92-P1c  Ocu-Mir-92-P2a  Ocu-Mir-92-P2c  Ocu-Mir-92-P2d 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Hsa-Mir-92-P1d  Isc-Mir-92  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)
1935211406: 269-332 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCGGGACCCCGGGCCCCGGGCGGGCGGGAGGGACGGGGACGCGGUGCAGUGUUGUUCUUUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCUCGGCCCCCCGGGCCUCCCCCUC
Get precursor sequence
Structure
        10          20        30        40        50        60   
AAGCGGGACCCCGGGCC--|    C    G     GA    G   C           GUUCUUU 
                   CCGGG GGGC GGAGG  CGGG ACG GGUGCAGUGUU       \
                   GGCUC CCCG CCUCC  GCCC UGC UCACGUUAUAA       C
CUCCCCCUCCGGGCCCCCC^    C    G     G-    -   -           CCGCCCC 
  120       110       100        90           80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-92-P1d_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGACGGGGACGCGGUGCAGUGUU -25
Get sequence
Mature sequence

Ocu-Mir-92-P1d_3p

mirBase accessionNone
Sequence
42- UAUUGCACUCGUCCCGGCCUCC -64
Get sequence