Mir-92-P1a

MirGeneDB ID

Gga-Mir-92-P1a

Family name

MIR-92 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-92-1

Paralogues

Gga-Mir-92-P1c Gga-Mir-92-P2a Gga-Mir-92-P2c

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 149439857-149439915 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-92-P1a 1: 149439857-149439915 [-] UCSC Ensembl
Mir-19-P2a 1: 149439972-149440032 [-] UCSC Ensembl
Mir-17-P4a 1: 149440105-149440163 [-] UCSC Ensembl
Mir-19-P1a 1: 149440280-149440337 [-] UCSC Ensembl
Mir-17-P2a 1: 149440419-149440483 [-] UCSC Ensembl
Mir-17-P1a 1: 149440570-149440630 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AAUGUGGAAAACUUGUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGCGUUUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAGGCUGAAACAC

Get precursor sequence

Structure

        10          20        30        40        50         
AAUGUGGAAAACUUGUA-  -| UU   AC            C   U        GUGCG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG     U
CACAAAGUCGGAGAUAGG  U^ UU   GU            U   -        UGUCU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-92-P1a_5p*

mirBase accession

MIMAT0026495

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-92-5p
miRDB: MIMAT0026495

Mature sequence

Gga-Mir-92-P1a_3p

mirBase accession

MIMAT0001109

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence