Mir-17-P4c

MirGeneDB ID

Xtr-Mir-17-P4c

Family name

MIR-17 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-20b

Paralogues

Xtr-Mir-17-P1a Xtr-Mir-17-P1c Xtr-Mir-17-P2a Xtr-Mir-17-P2c Xtr-Mir-17-P4a Xtr-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr8: 47197940-47198000 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GGAUUGGCAAGUGCUCUGUCAAAGCAGUUCCAAAGUGCUCAUAGUGCAGGUAGUUGUAUUGAUGUUCUACUGUAAUAUGGGCACUUACAGUACUGCUAGACAAUAUUCAUCUCCUCGCUUG

Get precursor sequence

Structure

        10           20        30         40        50          
GGAUUGGCAAGUGCUCU---|  AA      UCCA-           G     G   UUGUAU 
                    GUC  AGCAGU     AAGUGCUCAUA UGCAG UAG      \
                    CAG  UCGUCA     UUCACGGGUAU AUGUC AUC      U
GUUCGCUCCUCUACUUAUAA^  A-      UGACA           A     -   UUGUAG 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-17-P4c_5p

mirBase accession

MIMAT0003707

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-20b

Star sequence

Xtr-Mir-17-P4c_3p*

mirBase accession

None

Sequence

38- ACUGUAAUAUGGGCACUUACAGU -61

Get sequence