MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-17-P4d

Family name MIR-17 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-93
Paralogues Eca-Mir-17-P1a  Eca-Mir-17-P1c  Eca-Mir-17-P1d  Eca-Mir-17-P2a  Eca-Mir-17-P2c  Eca-Mir-17-P4a  Eca-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCACAUCUUGGACCUUAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCAGGGACACAGCCUCUCUGCCAAUCG
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Structure
        10          20        30          40        50        60
UCACAUCUUGGACCUUA--     G       CA-       -|    U    G   UGUGAU 
                   GUCCU GGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGG CCCCGAG   UUCACGA CGAGU CGUC AUC      A
GCUAACCGUCUCUCCGACA     A       CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P4d_5p
mirBase accessionMIMAT0013060
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Eca-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
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