Mir-19-P1a

MirGeneDB ID

Ocu-Mir-19-P1a

Family name

MIR-19 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-19a

Paralogues

Ocu-Mir-19-P2a Ocu-Mir-19-P2c

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(oryCun2_add)

chr8: 93067987-93068044 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1a)

Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

GUUAAUAGUUUUUGUUUGCAGUCUUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUAUUUCCUUCAAGUGAUUU

Get precursor sequence

Structure

        10          20        30        40          50       
GUUAAUAGUUUUUGUUU--    U  U                 --|     U  AAGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GGUAGUCAAAACGUAUC  AACGUG UG     A
UUUAGUGAACUUCCUUUAU    C  U                 UA^     U  AUGUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-19-P1a_5p*

mirBase accession

MIMAT0048115

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

Get sequence

Mature sequence

Ocu-Mir-19-P1a_3p

mirBase accession

MIMAT0048116

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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