Mir-19-P1a

MirGeneDB ID

Gja-Mir-19-P1a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-19-P2a Gja-Mir-19-P2c

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Ete-Mir-19-P1a Gga-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Sto-Mir-19-P1a-v2 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015159750.1: 119825-119882 [-]

Precursor
(pre-Mir +30nt flank)

AAACAUAGUAAUGUUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUUGUGGCCUGUUAUUGCCUACAUAAAACCG

Get precursor sequence

Structure

        10          20        30        40          50       
AAACAUAGUAAUGUUUU--    U  UCU               --|     U  AAGAA 
                   GCAG CC   GUUAGUUUUGCAUAG  UUGCAC AC     G
                   UGUC GG   UAGUCAAAACGUAUC  AACGUG UG     A
GCCAAAAUACAUCCGUUAU    C  UGU               UA^     U  AUGUA 
      110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-19-P1a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

Get sequence

Mature sequence

Gja-Mir-19-P1a_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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