MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-92-P2g

Family name MIR-92 (all species)
Seed AUUGCAC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-25b
Paralogues Pma-Mir-92-P1g  Pma-Mir-92-P1h  Pma-Mir-92-P1o1 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046115.1: 754312-754371 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2g)
Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGCGGGGUCUCGUCUGGACGGCGCGAGCAGGCGGAGACUGGAGCAAGUGCUCUACACUCGUGGUGGCAUUGCACUAGUCUCAGUCUGCCCGAGUCGCCGCCCGAAACUUUCACCACCC
Get precursor sequence
Structure
        10           20        30        40        50          
GAUGCGGGGUCUCGUCU---| A    G  A      G        A    G    CUACAC 
                    GG CGGC CG GCAGGC GAGACUGG GCAA UGCU      \
                    CC GCUG GC CGUCUG CUCUGAUC CGUU ACGG      U
CCCACCACUUUCAAAGCCCG^ -    A  C      A        A    -    UGGUGC 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha site +1 on the 5p arm relative to what is annotated here. There is an indel in the asssembled genome relative to the miRBase entry.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-92-P2g_5p*

mirBase accessionMIMAT0019406
Sequence
0- AGGCGGAGACUGGAGCAAGUGCU -23
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Mature sequence

Pma-Mir-92-P2g_3p

mirBase accessionMIMAT0019407
Sequence
38- CAUUGCACUAGUCUCAGUCUGC -60
Get sequence