Mir-92-P2g

MirGeneDB ID

Pma-Mir-92-P2g

Family name

MIR-92 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-25b

Paralogues

Pma-Mir-92-P1g Pma-Mir-92-P1h Pma-Mir-92-P1o1

Orthologues

Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 754312-754371 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GAUGCGGGGUCUCGUCUGGACGGCGCGAGCAGGCGGAGACUGGAGCAAGUGCUCUACACUCGUGGUGGCAUUGCACUAGUCUCAGUCUGCCCGAGUCGCCGCCCGAAACUUUCACCACCC

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Structure

        10           20        30        40        50          
GAUGCGGGGUCUCGUCU---| A    G  A      G        A    G    CUACAC 
                    GG CGGC CG GCAGGC GAGACUGG GCAA UGCU      \
                    CC GCUG GC CGUCUG CUCUGAUC CGUU ACGG      U
CCCACCACUUUCAAAGCCCG^ -    A  C      A        A    -    UGGUGC 
.       110       100         90        80         70

Deep sequencing

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Comment

There is a second Drosha site +1 on the 5p arm relative to what is annotated here. There is an indel in the asssembled genome relative to the miRBase entry.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-92-P2g_5p*

mirBase accession

MIMAT0019406

Sequence

0- AGGCGGAGACUGGAGCAAGUGCU -23

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Mature sequence

Pma-Mir-92-P2g_3p

mirBase accession

MIMAT0019407

Sequence

38- CAUUGCACUAGUCUCAGUCUGC -60

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