Mir-17-P4g

MirGeneDB ID

Pma-Mir-17-P4g

Family name

MIR-17 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-20a

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P2h Pma-Mir-17-P3g Pma-Mir-17-P3h-v1 Pma-Mir-17-P4h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 751997-752055 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

CUUGUGGUGUUAUGUCUGCCCACAGGGUGCCAAAGUGCUUAUAGUGCAGGUAGUUGAUCUUAGUCUACUGCAUUUUGAGCACUUGUAGCACCAGGUGUGGAAAAACCAUCCUGUAGGUC

Get precursor sequence

Structure

        10         20         30         40        50         
CUUGUGGUGUUAUGUCUG-  -   AG     CA-|        U       G   UUGAU 
                   CC CAC  GGUGC   AAGUGCUUA AGUGCAG UAG     \
                   GG GUG  CCACG   UUCACGAGU UUACGUC AUC     C
CUGGAUGUCCUACCAAAAA  U   GA     AUG^        U       -   UGAUU 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-17-P4g_5p

mirBase accession

MIMAT0019395

Sequence

0- CAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Pma-Mir-17-P4g_3p*

mirBase accession

MIMAT0019396

Sequence

36- ACUGCAUUUUGAGCACUUGUAGC -59

Get sequence