MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-17-P4g

Family name MIR-17 (all species)
Seed AAAGUGC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-20a
Paralogues Pma-Mir-17-P1g  Pma-Mir-17-P2g  Pma-Mir-17-P2h  Pma-Mir-17-P3g  Pma-Mir-17-P3h-v1  Pma-Mir-17-P3h-v2  Pma-Mir-17-P4h 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046115.1: 751997-752055 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4g)
Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUGGUGUUAUGUCUGCCCACAGGGUGCCAAAGUGCUUAUAGUGCAGGUAGUUGAUCUUAGUCUACUGCAUUUUGAGCACUUGUAGCACCAGGUGUGGAAAAACCAUCCUGUAGGUC
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Structure
        10         20         30         40        50         
CUUGUGGUGUUAUGUCUG-  -   AG     CA-|        U       G   UUGAU 
                   CC CAC  GGUGC   AAGUGCUUA AGUGCAG UAG     \
                   GG GUG  CCACG   UUCACGAGU UUACGUC AUC     C
CUGGAUGUCCUACCAAAAA  U   GA     AUG^        U       -   UGAUU 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-17-P4g_5p

mirBase accessionMIMAT0019395
Sequence
0- CAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Pma-Mir-17-P4g_3p*

mirBase accessionMIMAT0019396
Sequence
36- ACUGCAUUUUGAGCACUUGUAGC -59
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