MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-19-P1g

Family name MIR-19 (all species)
Seed GUGCAAA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-19c
Paralogues Pma-Mir-19-P1h  Pma-Mir-19-P2g  Pma-Mir-19-P2h 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046115.1: 750373-750438 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1g)
Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCUGCGCUGGUGAGAAGGUGCCUCUGUCAGUUUUGCAGAUUUGCACUGCGGUGGUGCCUCGUUCCCAAGCUGUGCAAAUCCCCUGCAAAACUGAUGGCGACACUGCAUGUGCUCCCUACCUCGU
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Structure
        10          20        30           40        50        60 
UCUCUGCGCUGGUGAGAA--    CCU              ---|        U  GGUGGUGCC 
                    GGUG   CUGUCAGUUUUGCA   GAUUUGCAC GC         \
                    UCAC   GGUAGUCAAAACGU   CUAAACGUG CG         U
UGCUCCAUCCCUCGUGUACG    AGC              CCC^        U  AACCCUUGC 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-19-P1g_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCAGAUUUGCACUGC -21
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Mature sequence

Pma-Mir-19-P1g_3p

mirBase accessionMIMAT0019394
Sequence
42- UGUGCAAAUCCCCUGCAAAACUGA -66
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