Mir-19-P1g

MirGeneDB ID

Pma-Mir-19-P1g

Family name

MIR-19 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-19c

Paralogues

Pma-Mir-19-P1h Pma-Mir-19-P2g Pma-Mir-19-P2h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 750373-750438 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UCUCUGCGCUGGUGAGAAGGUGCCUCUGUCAGUUUUGCAGAUUUGCACUGCGGUGGUGCCUCGUUCCCAAGCUGUGCAAAUCCCCUGCAAAACUGAUGGCGACACUGCAUGUGCUCCCUACCUCGU

Get precursor sequence

Structure

        10          20        30           40        50        60 
UCUCUGCGCUGGUGAGAA--    CCU              ---|        U  GGUGGUGCC 
                    GGUG   CUGUCAGUUUUGCA   GAUUUGCAC GC         \
                    UCAC   GGUAGUCAAAACGU   CUAAACGUG CG         U
UGCUCCAUCCCUCGUGUACG    AGC              CCC^        U  AACCCUUGC 
    120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-19-P1g_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCAGAUUUGCACUGC -21

Get sequence

Mature sequence

Pma-Mir-19-P1g_3p

mirBase accession

MIMAT0019394

Sequence

42- UGUGCAAAUCCCCUGCAAAACUGA -66

Get sequence