Mir-17-P2h

MirGeneDB ID

Pma-Mir-17-P2h

Family name

MIR-17 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-18a

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P3g Pma-Mir-17-P3h-v1 Pma-Mir-17-P4g Pma-Mir-17-P4h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1977198-1977260 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2h)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Mir-19-P2h NC_046132.1: 1985769-1985843 [+] UCSC Ensembl
Mir-92-P1h NC_046132.1: 1986098-1986160 [+] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GCCCUGGCUGAACCCUGUGCUUGCUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUUCCGCUGCGUAAAUGCUACUGCUCUAUGUGCUCCUUUACCCACAAGAGGUCACGCUCGCUGCUUUGCUG

Get precursor sequence

Structure

        10         20        30          40        50        60 
GCCCUGGCUGAACCCUGU-    G      CU--|   U    C   U    A   UUCCGCU 
                   GCUU CUUGUG    AAGG GCAU UAG GCAG UAG       G
                   UGGA GAACAC    UUCC CGUG AUC CGUC AUC       C
GUCGUUUCGUCGCUCGCAC    -      CCAU^   U    U   U    -   GUAAAUG 
 120       110        100        90        80         70