Mir-17-P4h

MirGeneDB ID

Pma-Mir-17-P4h

Family name

MIR-17 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-20b

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P2h Pma-Mir-17-P3g Pma-Mir-17-P3h-v1 Pma-Mir-17-P4g

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1982814-1982876 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4h)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Mir-19-P2h NC_046132.1: 1985769-1985843 [+] UCSC Ensembl
Mir-92-P1h NC_046132.1: 1986098-1986160 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GCUGUCCACGGAAGUUGCCUCGCCAGGCGCCAAAGUGCUGAUAGUGCAGGUAGGCUCCCUUGAUGCGACUACUGCAUUGUGAGCACUUGCAGCGCCUGGGAGGUCAUAGACUCCGACAUCGCU

Get precursor sequence

Structure

        10           20        30         40        50        60 
GCUGUCCACGGAAGUUG---|   G        CA-       G         G   GCUCCCU 
                    CCUC CCAGGCGC   AAGUGCU AUAGUGCAG UAG       \
                    GGAG GGUCCGCG   UUCACGA UGUUACGUC AUC       U
UCGCUACAGCCUCAGAUACU^   -        ACG       G         -   AGCGUAG 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-17-P4h_5p

mirBase accession

MIMAT0019397

Sequence

0- CAAAGUGCUGAUAGUGCAGGUAG -23

Get sequence

Star sequence

Pma-Mir-17-P4h_3p* (predicted)

mirBase accession

None

Sequence

40- ACUGCAUUGUGAGCACUUGCAGC -63

Get sequence