MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-92-P2f

Family name MIR-92 (all species)
Seed AUUGCAC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-92-P1e  Ebu-Mir-92-P2e 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)
FYBX02010282.1: 2176594-2176651 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGAUUCAGAGUUCAGGCCAACUCUGACAGGCUGAGCCCUGUGCAAACGCUUGUUUUAUUCCAGCAUUGCACUAGUCUCGGUCUGUCUGUGAUGGCUUGCCGCUUCAGUGGCUACC
Get precursor sequence
Structure
        10          20        30        40        50         
AGAUGAUUCAGAGUUCA--|    ACUCU           CCCU      AC   UGUUU 
                   GGCCA     GACAGGCUGAG    GUGCAA  GCU     \
                   UCGGU     CUGUCUGGCUC    CACGUU  CGA     U
CCAUCGGUGACUUCGCCGU^    AGUGU           UGAU      A-   CCUUA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Ebu-Mir-92-P2f_5p*

mirBase accessionNone
Sequence
0- AGGCUGAGCCCUGUGCAAACGCU -23
Get sequence
Mature sequence

Ebu-Mir-92-P2f_3p

mirBase accessionNone
Sequence
36- CAUUGCACUAGUCUCGGUCUGU -58
Get sequence