MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-92-P1a  Ami-Mir-92-P1c  Ami-Mir-92-P1d  Ami-Mir-92-P2a 
Orthologues Aca-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Hsa-Mir-92-P2c  Isc-Mir-92  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pbv-Mir-92-P2c  Rno-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Spt-Mir-92-P2c  Sto-Mir-92-P2c  Tgu-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711293.1: 2599564-2599628 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCGGGUGGUUAUGCUUUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUUUAGAAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUUCAUCGCUGACAACGUA
Get precursor sequence
Structure
        10          20        30        40        50        60  
CCGGGUGGUUAUGCUUU--|      U   GU         CA  A         GAUUAGUU 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        A
AUGCAACAGUCGCUACUUC^      C   AU         UG  -         AGAGGAAG 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Ami-Mir-92-P2c_5p*
mirBase accessionNone
Sequence 
0- CGGGUGGAUCACGAUGCAAUUUU -23
Get sequence
Mature sequence

Ami-Mir-92-P2c_3p
mirBase accessionNone
Sequence 
43- AAUUGCACGGUAUCCAUCUGUA -65
Get sequence