Mir-17-P2a

MirGeneDB ID

Cfa-Mir-17-P2a

Family name

MIR-17 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-18a

Paralogues

Cfa-Mir-17-P1a Cfa-Mir-17-P1c Cfa-Mir-17-P1d Cfa-Mir-17-P2c Cfa-Mir-17-P4a Cfa-Mir-17-P4c Cfa-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr22: 42478151-42478215 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-17-P1a chr22: 42478013-42478072 [+] UCSC Ensembl
Mir-17-P2a chr22: 42478151-42478215 [+] UCSC Ensembl
Mir-19-P1a chr22: 42478298-42478355 [+] UCSC Ensembl
Mir-17-P4a chr22: 42478462-42478520 [+] UCSC Ensembl
Mir-19-P2a chr22: 42478597-42478657 [+] UCSC Ensembl
Mir-92-P1a chr22: 42478714-42478772 [+] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GGGCCUGCUGCUGCUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAAUAAUCC

Get precursor sequence

Structure

        10          20        30          40        50        60 
GGGCCUGCUGCUGCUGAGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CCUAAUAACCUACUUUUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-17-P2a_5p

mirBase accession

MIMAT0009832

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-18a
miRDB: MIMAT0009832

Star sequence

Cfa-Mir-17-P2a_3p*

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence