MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-19b-2
Paralogues Cli-Mir-19-P1a  Cli-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold72: 3451991-3452050 [-]
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c scaffold72: 3451682-3451746 [-]
Mir-92-P1c scaffold72: 3451822-3451883 [-]
Mir-19-P2c scaffold72: 3451991-3452050 [-]
Mir-17-P4c scaffold72: 3452115-3452175 [-]
Mir-17-P2c scaffold72: 3452309-3452373 [-]
Mir-17-P1c scaffold72: 3452469-3452526 [-]
Precursor
(pre-Mir +30nt flank)
UUUCUGGAGAAGACAGUGCUAAUUACAGUCAGUUUUGCAGGUUUGCAUCCCAGCUUACUAAAAUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGUGAAUCUGUGGUGAAUAA
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Structure
        10           20        30         40         50          
UUUCUGGAGAAGACAGU---   A                  -  -|     UCC    UUACU 
                    GCU AUUACAGUCAGUUUUGCA GG UUUGCA   CAGC     \
                    UGG UGGUGUCAGUCAAAACGU CC AAACGU   GUCG     A
AAUAAGUGGUGUCUAAGUGG   -                  A  U^     ---    UUAAA 
.       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-19-P2c_5p*

mirBase accessionMIMAT0038431
Sequence
0- AGUUUUGCAGGUUUGCAUCCCAGC -24
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Mature sequence

Cli-Mir-19-P2c_3p

mirBase accessionMIMAT0038430
Sequence
37- UGUGCAAAUCCAUGCAAAACUGA -60
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