Mir-19-P2c

MirGeneDB ID

Cfa-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-19b-2

Paralogues

Cfa-Mir-19-P1a Cfa-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chrX: 104895961-104896026 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c chrX: 104895658-104895722 [-] UCSC Ensembl
Mir-92-P1c chrX: 104895826-104895886 [-] UCSC Ensembl
Mir-19-P2c chrX: 104895961-104896026 [-] UCSC Ensembl
Mir-17-P4c chrX: 104896094-104896154 [-] UCSC Ensembl
Mir-17-P2c chrX: 104896344-104896408 [-] UCSC Ensembl
Mir-17-P1c chrX: 104896517-104896575 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UGUUGGUGAAAUACCCUGCCGCUUCCGGUUAGUUUUGCAGGUUUGCAUUUCAGCGUACUUGUGCAUAUAGGGCUGUGCAAAUCCAUGCAAAACUGACCGUGAUCAUGUGUGUGCCGUCGGUGGCUC

Get precursor sequence

Structure

        10         20         30         40         50        60   
UGUUGGUGAAAUACCCU-  CGCU  -              -  -|     UUU    GUACUUGU 
                  GC    UC CGGUUAGUUUUGCA GG UUUGCA   CAGC        \
                  UG    AG GCCAGUCAAAACGU CC AAACGU   GUCG        G
CUCGGUGGCUGCCGUGUG  UACU  U              A  U^     ---    GGAUAUAC 
    120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUUUCAGC -24

Get sequence

Mature sequence

Cfa-Mir-19-P2c_3p

mirBase accession

MIMAT0006652

Sequence

43- UGUGCAAAUCCAUGCAAAACUGA -66

Get sequence

Proposed targets

TargetScanVert: cfa-miR-19b
miRDB: MIMAT0006652