Mir-430-P5

MirGeneDB ID

Laf-Mir-430-P5

Family name

MIR-430 (all species)

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-430-o44 Laf-Mir-430-P1 Laf-Mir-430-P2 Laf-Mir-430-P3 Laf-Mir-430-P4 Laf-Mir-430-P7

Orthologues

Bta-Mir-430-P5 Cfa-Mir-430-P5d1 Cfa-Mir-430-P5d2 Cja-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Mml-Mir-430-P5 Mmr-Mir-430-P5e Mmr-Mir-430-P5f Mmu-Mir-430-P5a Mmu-Mir-430-P5b Mmu-Mir-430-P5c Ocu-Mir-430-P5 Pab-Mir-430-P5 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P5c Xla-Mir-430-o5o1 Xla-Mir-430-o5o2 Xla-Mir-430-o5p1 Xla-Mir-430-o5p2 Xla-Mir-430-o5q1 Xla-Mir-430-o5q2 Xla-Mir-430-o5r Xla-Mir-430-o5s Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23 Xtr-Mir-430-o5b Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25 Xtr-Mir-430-o5d1 Xtr-Mir-430-o5d2 Xtr-Mir-430-o5e Xtr-Mir-430-o5f1 Xtr-Mir-430-o5f2 Xtr-Mir-430-o5g Xtr-Mir-430-o5h Xtr-Mir-430-o5j Xtr-Mir-430-o5k1 Xtr-Mir-430-o5k2 Xtr-Mir-430-o5k3 Xtr-Mir-430-o5k4 Xtr-Mir-430-o5k5 Xtr-Mir-430-o5k6 Xtr-Mir-430-o5k7 Xtr-Mir-430-o5k8 Xtr-Mir-430-o5k9 Xtr-Mir-430-o5k10 Xtr-Mir-430-o5k11 Xtr-Mir-430-o5k12 Xtr-Mir-430-o5k13 Xtr-Mir-430-o5k14 Xtr-Mir-430-o5k15 Xtr-Mir-430-o5k16 Xtr-Mir-430-o5k17 Xtr-Mir-430-o5k18 Xtr-Mir-430-o5k19 Xtr-Mir-430-o5k20 Xtr-Mir-430-o5k21 Xtr-Mir-430-o5k22 Xtr-Mir-430-o5k23 Xtr-Mir-430-o5k24 Xtr-Mir-430-o5k25 Xtr-Mir-430-o5k26 Xtr-Mir-430-o5k27 Xtr-Mir-430-o5l1 Xtr-Mir-430-o5l2 Xtr-Mir-430-o5l3 Xtr-Mir-430-o5l4 Xtr-Mir-430-o5l5 Xtr-Mir-430-o5l6 Xtr-Mir-430-o5l7 Xtr-Mir-430-o5l8 Xtr-Mir-430-o5l9 Xtr-Mir-430-o5l10 Xtr-Mir-430-o5l11 Xtr-Mir-430-o5l12 Xtr-Mir-430-o5l13 Xtr-Mir-430-o5l14 Xtr-Mir-430-o5l15 Xtr-Mir-430-o5l16 Xtr-Mir-430-o5l17 Xtr-Mir-430-o5l18 Xtr-Mir-430-o5l19 Xtr-Mir-430-o5m Xtr-Mir-430-o5n1 Xtr-Mir-430-o5n2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010031.1: 14891515-14891572 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P5)

Mir-430-P7 GL010031.1: 14870696-14870755 [+] UCSC Ensembl
Mir-430-P5 GL010031.1: 14891515-14891572 [+] UCSC Ensembl
Mir-430-o44 GL010031.1: 14891773-14891833 [+] UCSC Ensembl

Seed

GUGCUGC

Precursor
(pre-Mir +30nt flank)

AUUCCUUUCAGAAAAAUCCCAACCUGUGGCACUCAAACUGUGGGGGCACUUUCUCCCAUGUACGAAAGUGCUGCUACUUUUUGAGUGUUACCGGGUGAGGAACAUUCAACGAACACCU

Get precursor sequence

Structure

        10         20         30        40        50        
AUUCCUUUCAGAAAAAU-  CA    -|           CU    G        CUCCC 
                  CC  ACCU GUGGCACUCAAA  GUGG GGCACUUU     A
                  GG  UGGG CAUUGUGAGUUU  CAUC UCGUGAAA     U
UCCACAAGCAACUUACAA  AG    C^           UU    G        GCAUG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Wh

Star sequence

Laf-Mir-430-P5_5p*

mirBase accession

None

Sequence

0- ACUCAAACUGUGGGGGCACUUU -22

Get sequence

Mature sequence

Laf-Mir-430-P5_3p (predicted)

mirBase accession

None

Sequence

36- AGUGCUGCUACUUUUUGAGUGU -58

Get sequence