Mir-430-P5c

MirGeneDB ID

Mmu-Mir-430-P5c

Family name

MIR-430 (all species)

Seed

GUGCCGC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-293

Paralogues

Mmu-Mir-430-P1 Mmu-Mir-430-P2 Mmu-Mir-430-P3 Mmu-Mir-430-P4 Mmu-Mir-430-P5a Mmu-Mir-430-P5b Mmu-Mir-430-P6 Mmu-Mir-430-P7a Mmu-Mir-430-P7b Mmu-Mir-430-P7c

Orthologues

Bta-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Mml-Mir-430-P5 Ocu-Mir-430-P5 Rno-Mir-430-P5c Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr7: 3220356-3220411 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P5c)

Mir-430-P5a chr7: 3218639-3218697 [+] UCSC Ensembl
Mir-430-P7a chr7: 3218932-3218989 [+] UCSC Ensembl
Mir-430-P5b chr7: 3219200-3219261 [+] UCSC Ensembl
Mir-430-P7b chr7: 3219494-3219550 [+] UCSC Ensembl
Mir-430-P5c chr7: 3220356-3220411 [+] UCSC Ensembl
Mir-430-P7c chr7: 3220655-3220712 [+] UCSC Ensembl
Mir-430-P6 chr7: 3220779-3220837 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUCCCUGUGGAAAUGCUUCAAUCUGUGGUACUCAAACUGUGUGACAUUUUGUUCUUUGUAAGAAGUGCCGCAGAGUUUGUAGUGUUGCCGAUUGAGAAACUGCAGUUGGCCUAAG

Get precursor sequence

Structure

        10          20        30         40        50       
GGUCCCUGUGGAAAUGC--       U  GG    -|     G    A      GUUCU 
                   UUCAAUC GU  UACU CAAACU UGUG CAUUUU     \
                   GAGUUAG CG  GUGA GUUUGA ACGC GUGAAG     U
GAAUCCGGUUGACGUCAAA       C  UU    U^     G    C      AAUGU 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-430-P5c_5p*

mirBase accession

MIMAT0004573

Sequence

0- ACUCAAACUGUGUGACAUUUU -21

Get sequence

Proposed targets

microrna.org: MIMAT0004573
TargetScanVert: mmu-miR-293-5p
miRDB: MIMAT0004573

Mature sequence

Mmu-Mir-430-P5c_3p

mirBase accession

MIMAT0000371

Sequence

34- AGUGCCGCAGAGUUUGUAGUGU -56

Get sequence

Proposed targets

microrna.org: MIMAT0000371
TargetScanVert: mmu-miR-293-3p
miRDB: MIMAT0000371