| MirGeneDB ID | Xla-Mir-430-o5s |
|---|
| Family name |
MIR-430 (all species) |
|---|
| Seed |
AAGUGCU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-430-o4a
Xla-Mir-430-o4b
Xla-Mir-430-o5o1
Xla-Mir-430-o5o2
Xla-Mir-430-o5p1
Xla-Mir-430-o5p2
Xla-Mir-430-o5q1
Xla-Mir-430-o5q2
Xla-Mir-430-o5r
Xla-Mir-430-o6a
Xla-Mir-430-o6b
Xla-Mir-430-o7a
Xla-Mir-430-o7b
Xla-Mir-430-o8a
Xla-Mir-430-o8b
Xla-Mir-430-o9
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xla-Mir-430-P3a
Xla-Mir-430-P3b
|
|---|
| Orthologues |
Bta-Mir-430-P5
Cpo-Mir-430-P5
Dno-Mir-430-P5
Ete-Mir-430-P5
Hsa-Mir-430-P5
Mml-Mir-430-P5
Ocu-Mir-430-P5
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694811.1: 4533432-4533493 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAUUUUUCAGUGCAAAGCCAAUUUUACUUUACCCAAAACUCGGCCCUCUCUUGUGUUUCAAUUAUUAAGAAAGUGCUUUUUGUUUUGGGCAUUGUAUGUAUUGGGCACUCCAUCUUGAAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUUUUUCAGUGCAAAG- UU- UUUA UC--| C C UGUGUUU
CCAAU UAC CCCAAAAC GGC CU UCU C
GGUUA AUG GGGUUUUG UCG GA AGA A
CUAAAGUUCUACCUCACG UGU UUAC UUUU^ U A AUUAUUA
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-430-o5s_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCAAAACUCGGCCCUCUCU -21
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-430-o5s_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAAGUGCUUUUUGUUUUGGGCAU -62
Get sequence
|
|---|
