Mir-430-P3b

MirGeneDB ID

Xla-Mir-430-P3b

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-430-o4a Xla-Mir-430-o4b Xla-Mir-430-o5o1 Xla-Mir-430-o5o2 Xla-Mir-430-o5p1 Xla-Mir-430-o5p2 Xla-Mir-430-o5q1 Xla-Mir-430-o5q2 Xla-Mir-430-o5r Xla-Mir-430-o5s Xla-Mir-430-o6a Xla-Mir-430-o6b Xla-Mir-430-o7a Xla-Mir-430-o7b Xla-Mir-430-o8a Xla-Mir-430-o8b Xla-Mir-430-o9 Xla-Mir-430-P1a Xla-Mir-430-P1b Xla-Mir-430-P3a

Orthologues

Aca-Mir-430-P3 Ami-Mir-430-P3 Bta-Mir-430-P3 Cfa-Mir-430-P3 Cli-Mir-430-P3 Cmi-Mir-430-P3 Cpi-Mir-430-P3 Cpo-Mir-430-P3 Dno-Mir-430-P3 Dre-Mir-430-o3b1 Dre-Mir-430-o3b2 Ete-Mir-430-P3 Gga-Mir-430-P3 Gja-Mir-430-P3 Hsa-Mir-430-P3 Mdo-Mir-430-P3 Mml-Mir-430-P3 Mmu-Mir-430-P3 Oan-Mir-430-P3 Ocu-Mir-430-P3 Rno-Mir-430-P3 Sha-Mir-430-P3 Spt-Mir-430-P3 Sto-Mir-430-P3 Tgu-Mir-430-P3 Xtr-Mir-430-P3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 56777932-56777991 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGUCAACUGUAAUCAAGGAUCUCCUUACACUUAAACAUUGAGGGACUUUUUCCCAUGUACUGCCGUAAGUGCUUCAAUGUUUUGGUGAAAGAGGGUCCAAGCCACCCAAUGCUGAACU

Get precursor sequence

Structure

        10          20        30        40        50         
UCAGUCAACUGUAAUCAA--|    UC   A    U           G    UUUCCCAU 
                    GGAUC  CUU CACU AAACAUUGAGG ACUU        G
                    CCUGG  GAA GUGG UUUGUAACUUC UGAA        U
UCAAGUCGUAACCCACCGAA^    GA   A    U           G    UGCCGUCA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-430-P3b_5p*

mirBase accession

None

Sequence

0- ACUUAAACAUUGAGGGACUUUUU -23

Get sequence

Mature sequence

Xla-Mir-430-P3b_3p

mirBase accession

None

Sequence

37- UAAGUGCUUCAAUGUUUUGGUGA -60

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