MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-430-o7b

Family name MIR-430 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-428a-2
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o1  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6a  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o8a  Xla-Mir-430-o8b  Xla-Mir-430-o9  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a  Xla-Mir-430-P3b 
Orthologues Bta-Mir-430-P7  Cja-Mir-430-P7  Eca-Mir-430-P7  Hsa-Mir-430-P7  Laf-Mir-430-P7  Mml-Mir-430-P7  Mmr-Mir-430-P7  Mmu-Mir-430-P7b  Pab-Mir-430-P7  Rno-Mir-430-P7b  Xtr-Mir-430-o7 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030739.1: 26162871-26162929 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o7b)
Mir-430-o6b NC_030739.1: 26162703-26162762 [+] UCSC Ensembl
Mir-430-o7b NC_030739.1: 26162871-26162929 [+] UCSC Ensembl
Mir-430-o8b NC_030739.1: 26163302-26163359 [+] UCSC Ensembl
Seed AAGUGCU
Precursor
(pre-Mir +30nt flank)
GUCCAAGUGUCCUGUCCUGUGUUCACAUAUCGGCCAAACUGGGGCGCUGCCACUGUAGCUUGGGGUAAGUGCUCUCUAGUUCGGUUGCUGUGUGUGCAGGAAUAGCAUGUGAGGGGCAU
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Structure
        10          20        30        40           50       
GUCCAAGUGUCCUGUCCUG--   U      U     A      - -    -|   ACUGU 
                     UGU CACAUA CGGCC AACUGG G GCGC UGCC     A
                     ACG GUGUGU GUUGG UUGAUC C CGUG AUGG     G
UACGGGGAGUGUACGAUAAGG   U      C     C      U U    A^   GGUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-430-o7b_5p* (predicted)

mirBase accessionMIMAT0046597
Sequence
0- CGGCCAAACUGGGGCGCUGCCA -22
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Mature sequence

Xla-Mir-430-o7b_3p

mirBase accessionMIMAT0046598
Sequence
35- UAAGUGCUCUCUAGUUCGGUUGCU -59
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