MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-430-o8a

Family name MIR-430 (all species)
Seed AAGUGCU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-428b
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o1  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6a  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o7b  Xla-Mir-430-o8b  Xla-Mir-430-o9  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a  Xla-Mir-430-P3b 
Orthologues Dno-Mir-430-P8  Ete-Mir-430-P8  Hsa-Mir-430-P8a  Mml-Mir-430-P8  Xtr-Mir-430-o8 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030738.1: 764746-764803 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o8a)
Mir-430-o7a NC_030738.1: 764304-764364 [+] UCSC Ensembl
Mir-430-o8a NC_030738.1: 764746-764803 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCACCAGCACCUCUCCGGGCUCACAGCAGCCAAACAGAAGCUCAUUCUUGUUGUCUCUAUGAGAAAGUGCUUCUCGUUCGGCUGAUUUGGCCACCGGGAUAUCAUCAGAACUCCU
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Structure
        10         20          30         40        50        
GUCCCACCAGCACCUCU-   --|  U  CAG     A   -      UCA    UGUUGU 
                  CCG  GGC CA   CAGCC AAC AGAAGC   UUCU      \
                  GGC  CCG GU   GUCGG UUG UCUUCG   AAGA      C
UCCUCAAGACUACUAUAG   CA^  -  UUA     C   C      UGA    GUAUCU 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-430-o8a_5p*

mirBase accessionMIMAT0046599
Sequence
0- AGCCAAACAGAAGCUCAUUCU -21
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Mature sequence

Xla-Mir-430-o8a_3p

mirBase accessionMIMAT0046600
Sequence
36- AAAGUGCUUCUCGUUCGGCUGA -58
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