MirGeneDB ID | Xla-Mir-430-P3a |
Family name |
MIR-430 (all species) |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-430-o4a
Xla-Mir-430-o4b
Xla-Mir-430-o5o1
Xla-Mir-430-o5o2
Xla-Mir-430-o5p1
Xla-Mir-430-o5p2
Xla-Mir-430-o5q1
Xla-Mir-430-o5q2
Xla-Mir-430-o5r
Xla-Mir-430-o5s
Xla-Mir-430-o6a
Xla-Mir-430-o6b
Xla-Mir-430-o7a
Xla-Mir-430-o7b
Xla-Mir-430-o8a
Xla-Mir-430-o8b
Xla-Mir-430-o9
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xla-Mir-430-P3b
|
Orthologues |
Aca-Mir-430-P3
Ami-Mir-430-P3
Bta-Mir-430-P3
Cfa-Mir-430-P3
Cja-Mir-430-P3
Cli-Mir-430-P3
Cmi-Mir-430-P3
Cpi-Mir-430-P3
Cpo-Mir-430-P3
Dno-Mir-430-P3
Dre-Mir-430-o3a1
Dre-Mir-430-o3a2
Dre-Mir-430-o3a3
Dre-Mir-430-o3a4
Dre-Mir-430-o3a5
Dre-Mir-430-o3a6
Dre-Mir-430-o3a7
Dre-Mir-430-o3a8
Dre-Mir-430-o3a9
Dre-Mir-430-o3a10
Dre-Mir-430-o3a11
Dre-Mir-430-o3a12
Dre-Mir-430-o3a13
Dre-Mir-430-o3a14
Dre-Mir-430-o3a15
Dre-Mir-430-o3a16
Eca-Mir-430-P3
Ete-Mir-430-P3
Gga-Mir-430-P3
Gja-Mir-430-P3
Hsa-Mir-430-P3
Laf-Mir-430-P3
Mdo-Mir-430-P3
Mml-Mir-430-P3
Mmr-Mir-430-P3
Mmu-Mir-430-P3
Neu-Mir-430-P3
Oan-Mir-430-P3
Ocu-Mir-430-P3
Pab-Mir-430-P3
Rno-Mir-430-P3
Sha-Mir-430-P3
Spt-Mir-430-P3
Sto-Mir-430-P3
Tgu-Mir-430-P3
Xtr-Mir-430-P3
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030724.1: 61970990-61971049 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-430-P3a) |
Mir-430-o4a
NC_030724.1: 61970555-61970612 [-]
UCSC
Ensembl
Mir-430-P1a
NC_030724.1: 61970687-61970748 [-]
UCSC
Ensembl
Mir-430-P3a
NC_030724.1: 61970990-61971049 [-]
UCSC
Ensembl
|
Seed |
AAGUGCU |
Precursor (pre-Mir +30nt flank) |
UCAGUCAAUUGUCACCACGGAUCUCCUUACACUUAAACAUUGAGGGACUUUUUCCCAUGUACUGCUGCAAGUGCUUCAAUGUUUUGGUGAAAGAAGAUCCAGCCACCCAAUGCAAUGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAGUCAAUUGUCACCAC--| C A U G UUUCCCAU
GGAUCU CUU CACU AAACAUUGAGG ACUU G
CCUAGA GAA GUGG UUUGUAACUUC UGAA U
ACCGUAACGUAACCCACCGA^ A A U G CGUCGUCA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Xla-Mir-430-P3a_5p* |
mirBase accession | None |
Sequence |
0- ACUUAAACAUUGAGGGACUUUUU -23
Get sequence
|
Mature sequence |
Xla-Mir-430-P3a_3p |
mirBase accession | None |
Sequence |
37- CAAGUGCUUCAAUGUUUUGGUGA -60
Get sequence
|