Mir-430-P3

MirGeneDB ID

Rno-Mir-430-P3

Family name

Species

MiRBase ID

Paralogues

Rno-Mir-430-P1 Rno-Mir-430-P4 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P5c Rno-Mir-430-P6a Rno-Mir-430-P6b Rno-Mir-430-P7a Rno-Mir-430-P7b Rno-Mir-430-P7c

Orthologues

Aca-Mir-430-P3 Ami-Mir-430-P3 Bta-Mir-430-P3 Cfa-Mir-430-P3 Cja-Mir-430-P3 Cli-Mir-430-P3 Cmi-Mir-430-P3 Cpi-Mir-430-P3 Cpo-Mir-430-P3 Dno-Mir-430-P3 Dre-Mir-430-o3a1 Dre-Mir-430-o3a2 Dre-Mir-430-o3a3 Dre-Mir-430-o3a4 Dre-Mir-430-o3a5 Dre-Mir-430-o3a6 Dre-Mir-430-o3a7 Dre-Mir-430-o3a8 Dre-Mir-430-o3a9 Dre-Mir-430-o3a10 Dre-Mir-430-o3a11 Dre-Mir-430-o3a12 Dre-Mir-430-o3a13 Dre-Mir-430-o3a14 Dre-Mir-430-o3a15 Dre-Mir-430-o3a16 Dre-Mir-430-o3b1 Dre-Mir-430-o3b2 Eca-Mir-430-P3 Ete-Mir-430-P3 Gga-Mir-430-P3 Gja-Mir-430-P3 Hsa-Mir-430-P3 Laf-Mir-430-P3 Mdo-Mir-430-P3 Mml-Mir-430-P3 Mmr-Mir-430-P3 Mmu-Mir-430-P3 Neu-Mir-430-P3 Oan-Mir-430-P3 Ocu-Mir-430-P3 Pab-Mir-430-P3 Sha-Mir-430-P3 Spt-Mir-430-P3 Sto-Mir-430-P3 Tgu-Mir-430-P3 Xla-Mir-430-P3a Xla-Mir-430-P3b Xtr-Mir-430-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr2: 231875231-231875291 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P3)

Mir-430-P1 chr2: 231874984-231875043 [+] UCSC Ensembl
Mir-430-P3 chr2: 231875231-231875291 [+] UCSC Ensembl
Mir-430-P4 chr2: 231875359-231875416 [+] UCSC Ensembl
Mir-92-P2a chr2: 231875463-231875522 [+] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

UUCGUAAGUAUAAAGACUGGGCUUCCCACCACUUAAACGUGGUUGUCCUUGCUUUGGAACGAAGAAAGUAAGUGCUUCCAUGUUUGGGUGAUGGUAAGUUUUCCUUUAUCCUCACGCCUUU

Get precursor sequence

Structure

        10          20        30        40        50          
UUCGUAAGUAUAAAGACU--|     C   C             UU UC      UUGGAA 
                    GGGCUU CCA CACUUAAACGUGG  G  CUUGCU      \
                    UUUGAA GGU GUGGGUUUGUACC  C  GAAUGA      C
UUUCCGCACUCCUAUUUCCU^     U   A             UU GU      AAGAAG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-430-P3_5p*

mirBase accession

None

Sequence

0- ACUUAAACGUGGUUGUCCUUGCU -23

Get sequence

Mature sequence

Rno-Mir-430-P3_3p

mirBase accession

None

Sequence

38- UAAGUGCUUCCAUGUUUGGGUGA -61

Get sequence