MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-302a
Paralogues Cpi-Mir-430-P1  Cpi-Mir-430-P2  Cpi-Mir-430-P4 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584529: 6232389-6232449 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P3)
Mir-92-P2a JH584529: 6231226-6231285 [-] UCSC Ensembl
Mir-430-P4 JH584529: 6231913-6231973 [-] UCSC Ensembl
Mir-430-P3 JH584529: 6232389-6232449 [-] UCSC Ensembl
Mir-430-P2 JH584529: 6232768-6232825 [-] UCSC Ensembl
Mir-430-P1 JH584529: 6233041-6233100 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCAGCCUCAGCUUAAAGGACCCCCACUACUUUAAUGUGGAAGUACUUGCUUUGCUCCUGAUAAAGUAAGUGCUUCCAUGUUUUAGUGAUGGUGAAACCUGAUUUUCAACUGCAGAACA
Get precursor sequence
Structure
        10         20         30        40        50          
UUUGCAGCCUCAGCUUAA-   ACCC-|  C    UU                  UUGCUC 
                   AGG     CCA UACU  AAUGUGGAAGUACUUGCU      \
                   UCC     GGU GUGA  UUGUACCUUCGUGAAUGA      C
ACAAGACGUCAACUUUUAG   AAAGU^  A    UU                  AAUAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-430-P3_5p*

mirBase accessionNone
Sequence
0- ACUUUAAUGUGGAAGUACUUGCU -23
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Mature sequence

Cpi-Mir-430-P3_3p (predicted)

mirBase accessionMIMAT0037860
Sequence
38- UAAGUGCUUCCAUGUUUUAGUGA -61
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