MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-430-P7b

Family name MIR-430 (all species)
Seed AUCAAAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-291b
Paralogues Rno-Mir-430-P1  Rno-Mir-430-P3  Rno-Mir-430-P4  Rno-Mir-430-P5a  Rno-Mir-430-P5b  Rno-Mir-430-P5c  Rno-Mir-430-P6a  Rno-Mir-430-P6b  Rno-Mir-430-P7a  Rno-Mir-430-P7c 
Orthologues Bta-Mir-430-P7  Hsa-Mir-430-P7  Mml-Mir-430-P7  Mmu-Mir-430-P7b  Xla-Mir-430-o7b  Xtr-Mir-430-o7 
Node of Origin (locus) Muridae
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr1: 64537854-64537910 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P7b)
Mir-430-P6b chr1: 64536633-64536691 [-] UCSC Ensembl
Mir-430-P7c chr1: 64536751-64536808 [-] UCSC Ensembl
Mir-430-P5c chr1: 64537114-64537171 [-] UCSC Ensembl
Mir-430-P7b chr1: 64537854-64537910 [-] UCSC Ensembl
Mir-430-P5b chr1: 64538128-64538189 [-] UCSC Ensembl
Mir-430-P7a chr1: 64538418-64538475 [-] UCSC Ensembl
Mir-430-P5a chr1: 64538716-64538773 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGGAUCUUGGAAGUUGGAACACAGGGUCCAUCAAAGUGGAGGCCCUCUCCGUGGCUUGGCGGGAAAGUGCAUCCAUUUUGUUAGUCUCUGUGUCCCGCUGGACUCACCUGCCUGC
Get precursor sequence
Structure
        10          20        30        40        50        
CUCGGAUCUUGGAAGUU--| A        UCCAU         G  C  C   GUGGC 
                   GG ACACAGGG     CAAAGUGGA GC CU UCC     \
                   CC UGUGUCUC     GUUUUACCU CG GA AGG     U
CGUCCGUCCACUCAGGUCG^ C        UGAUU         A  U  A   GCGGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-430-P7b_5p

mirBase accessionNone
Sequence
0- CAUCAAAGUGGAGGCCCUCUCC -22
Get sequence
Co-mature sequence

Rno-Mir-430-P7b_3p

mirBase accessionMIMAT0017822
Sequence
35- AAAGUGCAUCCAUUUUGUUAGU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-291b
miRDB: MIMAT0017822