| MirGeneDB ID | Xtr-Mir-12478 |
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| Family name |
MIR-12478 (all species) |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Xla-Mir-12478-P1
Xla-Mir-12478-P2-v1
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| Node of Origin (locus) |
Xenopus
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| Node of Origin (family) |
Xenopus
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Genome context
(xenTro9_add) |
chr9: 24365337-24365393 [+]
UCSC
Ensembl
|
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| Seed |
GCUGGAG |
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Precursor
(pre-Mir +30nt flank) |
CUCACAGAAGUUAAUCAUUAACUCCUUCACUGCUGGAGUGGACAUCAAUGCAUUAUUUUGCAAGGCGUUGUAGGCCUCUCCAGCAUUGAAUGGGUUAAACUACCCUGGUCACCAUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCACAGAAGUUAAUCA--| C C U ACAU AUUAUU
UUAACUC UUCA UGCUGGAG GG CAAUGC \
AAUUGGG AAGU ACGACCUC CC GUUGCG U
UGUACCACUGGUCCCAUCA^ U U U GGAU GAACGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Xtr-Mir-12478_5p |
| mirBase accession | None |
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| Sequence |
0- UGCUGGAGUGGACAUCAAUGCA -22
Get sequence
|
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| Star sequence |
Xtr-Mir-12478_3p* |
| mirBase accession | None |
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| Sequence |
35- CGUUGUAGGCCUCUCCAGCAUU -57
Get sequence
|
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