Mir-34-P2b

MirGeneDB ID

Rno-Mir-34-P2b

Family name

MIR-34 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-34c

Paralogues

Rno-Mir-34-P1 Rno-Mir-34-P2a Rno-Mir-34-P3a Rno-Mir-34-P3b Rno-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr8: 55492034-55492088 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2b chr8: 55492034-55492088 [-] UCSC Ensembl
Mir-34-P2a chr8: 55492554-55492612 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

UGCAGGCUUUUUUCUAUGAGUCUAGUUACUAGGCAGUGUAGUUAGCUGAUUGCUAAUAGUACCAAUCACUAACCACACAGCCAGGUAAAAAGACUGAAAUUCCUCCGACAGAGCC

Get precursor sequence

Structure

        10          20        30        40        50       
UGCAGGCUUUUUUCUAUG--|    AG     A   A    A     C      CUAA 
                    AGUCU  UUACU GGC GUGU GUUAG UGAUUG    U
                    UCAGA  AAUGG CCG CACA CAAUC ACUAAC    A
CCGAGACAGCCUCCUUAAAG^    AA     A   A    C     -      CAUG 
   110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-34-P2b_5p

mirBase accession

MIMAT0000814

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGC -23

Get sequence

Proposed targets

microrna.org: MIMAT0000814
TargetScanVert: rno-miR-34c-5p
miRDB: MIMAT0000814

Star sequence

Rno-Mir-34-P2b_3p*

mirBase accession

MIMAT0004723

Sequence

33- AAUCACUAACCACACAGCCAGG -55

Get sequence

Proposed targets

microrna.org: MIMAT0004723
TargetScanVert: rno-miR-34c-3p
miRDB: MIMAT0004723