Mir-34-P3b

MirGeneDB ID

Rno-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

Paralogues

Rno-Mir-34-P1 Rno-Mir-34-P2a Rno-Mir-34-P2b Rno-Mir-34-P3a Rno-Mir-34-P3c

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 44897502-44897562 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a chr2: 44896085-44896147 [+] UCSC Ensembl
Mir-34-P3b chr2: 44897502-44897562 [+] UCSC Ensembl
Mir-34-P3c chr2: 44897616-44897677 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CGGGAAAAUCAGCGCUUGCCAGACUCAGGUAGGCAGUGUGUUGUUAGCUGGCUGCGUUGGGUUAAGUAAGCAGCCACAGCUACCCUGCCACUUGCUUCUGGACGGGUCUUCUUGUUAAUGA

Get precursor sequence

Structure

        10          20        30         40        50        60  
CGGGAAAAUCAGCGCUUG--|    CU     A     U  -     UAGCU      GUUGGG 
                    CCAGA  CAGGU GGCAG GU GUUGU     GGCUGC      U
                    GGUCU  GUUCA CCGUC CA CGACA     CCGACG      U
AGUAAUUGUUCUUCUGGGCA^    UC     -     C  U     -----      AAUGAA 
 .       110       100        90         80             70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUGUUGUUAGCUGGCUGCG -26

Get sequence

Star sequence

Rno-Mir-34-P3b_3p* (predicted)

mirBase accession

None

Sequence

40- CAGCCACAGCUACCCUGCCAC -61

Get sequence