Mir-34-P3b

MirGeneDB ID

Gga-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-449b

Paralogues

Gga-Mir-34-P1 Gga-Mir-34-P2a Gga-Mir-34-P2b Gga-Mir-34-P3a Gga-Mir-34-P3c Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

Z: 16703052-16703110 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3d Z: 16702024-16702082 [-] UCSC Ensembl
Mir-34-P3c Z: 16702892-16702949 [-] UCSC Ensembl
Mir-34-P3b Z: 16703052-16703110 [-] UCSC Ensembl
Mir-34-P3a Z: 16704036-16704097 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUCUCACUCUGCACGGACCCUGUGGCUGGAAGGCAGUGUGCUGUUAGCGGCUGCUGUGCUGAAUGGAGCAGUCACUACCACACUGCCACCUGCUGCAGGGAUAGACUACUGCUGUUUGG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AUCUCACUCUGCACGGA--|    UG  U  AA         CUGU   C       GUGCU 
                   CCCUG  GC GG  GGCAGUGUG    UAG GGCUGCU     \
                   GGGAC  CG CC  CCGUCACAC    AUC CUGACGA     G
GGUUUGUCGUCAUCAGAUA^    GU  U  A-         C---   A       GGUAA 
       110       100        90         80           70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P3b_5p

mirBase accession

MIMAT0007743

Sequence

0- AGGCAGUGUGCUGUUAGCGGCUGCU -25

Get sequence

Proposed targets

TargetScanVert: gga-miR-449b-5p
miRDB: MIMAT0007743

Star sequence

Gga-Mir-34-P3b_3p*

mirBase accession

MIMAT0007744

Sequence

38- CAGUCACUACCACACUGCCAC -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-449b-3p
miRDB: MIMAT0007744