MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-34-P3b

Family name MIR-34 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P1  Lch-Mir-34-P2a  Lch-Mir-34-P2b  Lch-Mir-34-P3a  Lch-Mir-34-P3d 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127011.1: 783378-783440 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)		 Mir-34-P3a JH127011.1: 782676-782741 [+] Ensembl
Mir-34-P3b JH127011.1: 783378-783440 [+] Ensembl
Mir-34-P3d JH127011.1: 783929-783987 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AUCUCUUUCACUAUAUUGCCUGCAUCAAGUAGGCAGUGUACUGUUAGCUGGCUGCUGGGUUUCUGCGGAUAGCAGUCGCUACUACUCUGCCACCUGUUGUAAGGACAUUUUCUCCAACAGUCU
Get precursor sequence
Structure
        10         20         30        40        50        60   
AUCUCUUUCACUAUAUUG-  -|   U  A  A     U   CUGU    U       GGGUUU 
                   CC UGCA CA GU GGCAG GUA    UAGC GGCUGCU      C
                   GG AUGU GU CA CCGUC CAU    AUCG CUGACGA      U
UCUGACAACCUCUUUUACA  A^   U  C  -     U   C---    -       UAGGCG 
 120       110       100         90           80         70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Mature sequence

Lch-Mir-34-P3b_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUACUGUUAGCUGGCUGCU -26
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Star sequence

Lch-Mir-34-P3b_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAGUCGCUACUACUCUGCCAC -63
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