MirGeneDB 2.1
MirGeneDB ID

Lch-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P1  Lch-Mir-34-P2a  Lch-Mir-34-P2b  Lch-Mir-34-P3a  Lch-Mir-34-P3d 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127011.1: 783378-783440 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUCUUUCACUAUAUUGCCUGCAUCAAGUAGGCAGUGUACUGUUAGCUGGCUGCUGGGUUUCUGCGGAUAGCAGUCGCUACUACUCUGCCACCUGUUGUAAGGACAUUUUCUCCAACAGUCU
Get precursor sequence
Structure
        10         20         30        40        50        60   
AUCUCUUUCACUAUAUUG-  -|   U  A  A     U   CUGU    U       GGGUUU 
                   CC UGCA CA GU GGCAG GUA    UAGC GGCUGCU      C
                   GG AUGU GU CA CCGUC CAU    AUCG CUGACGA      U
UCUGACAACCUCUUUUACA  A^   U  C  -     U   C---    -       UAGGCG 
 120       110       100         90           80         70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Mature sequence

Lch-Mir-34-P3b_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUACUGUUAGCUGGCUGCU -26
Get sequence
Star sequence

Lch-Mir-34-P3b_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAGUCGCUACUACUCUGCCAC -63
Get sequence