MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P2a  Lch-Mir-34-P2b  Lch-Mir-34-P3a  Lch-Mir-34-P3b  Lch-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Ami-Mir-34-P1  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P1  Cmi-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P1  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Hsa-Mir-34-P1  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P1  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mml-Mir-34-P1  Mmu-Mir-34-P1  Mun-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ocu-Mir-34-P1  Ovu-Mir-34  Pbv-Mir-34-P1  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Rno-Mir-34-P1  Sha-Mir-34-P1  Sko-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Xbo-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)
JH126562.1: 1219520-1219585 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCAAAGUCUCCACCUGUGGGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGACAAGUAAUAGAAAAAGCAAUCAGCAAGUAUACUGCUGCAGAAAUGUUGCACGCUGUGGAACGUGGAUAU
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Structure
        10         20         30         40        50        60  
UCUCAAAGUCUCCACCU-   -  UG     U         -|  A          GUGACAAG 
                  GUG GG  UUUCU UGGCAGUGU CUU GCUGGUUGUU        U
                  CAC UU  AAAGA GUCGUCAUA GAA CGACUAACGA        A
UAUAGGUGCAAGGUGUCG   G  GU     C         U^  -          AAAAGAUA 
    120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Mature sequence

Lch-Mir-34-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UGGCAGUGUCUUAGCUGGUUGUU -23
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Star sequence

Lch-Mir-34-P1_3p* (predicted)

mirBase accessionNone
Sequence
43- CAAUCAGCAAGUAUACUGCUGCA -66
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