MirGeneDB ID | Mal-Mir-34-P1 |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-34-P3c
Mal-Mir-34-P3d
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P1
Ami-Mir-34-P1
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P1
Cbr-Mir-34
Cel-Mir-34
Cfa-Mir-34-P1
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P1
Cmi-Mir-34-P1
Cpi-Mir-34-P1
Cpo-Mir-34-P1
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P1
Dpu-Mir-34
Dre-Mir-34-P1
Dsi-Mir-34
Dya-Mir-34
Ebu-Mir-34-P1
Efe-Mir-34
Esc-Mir-34
Ete-Mir-34-P1
Gga-Mir-34-P1
Gja-Mir-34-P1
Gmo-Mir-34-P1
Hsa-Mir-34-P1
Isc-Mir-34
Lch-Mir-34-P1
Lgi-Mir-34
Loc-Mir-34-P1
Mdo-Mir-34-P1
Mml-Mir-34-P1
Mmu-Mir-34-P1
Mun-Mir-34-P1
Npo-Mir-34
Oan-Mir-34-P1
Obi-Mir-34
Ocu-Mir-34-P1
Ovu-Mir-34
Pbv-Mir-34-P1
Pfl-Mir-34
Pma-Mir-34-P1
Pmi-Mir-34
Rno-Mir-34-P1
Sha-Mir-34-P1
Sko-Mir-34
Spt-Mir-34-P1
Spu-Mir-34
Sto-Mir-34-P1
Tca-Mir-34
Tgu-Mir-34-P1
Tni-Mir-34-P1
Xbo-Mir-34
Xla-Mir-34-P1a
Xla-Mir-34-P1b
Xtr-Mir-34-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884694.1: 3951056-3951120 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAUGGAAGCGGCUGCUGUGGGUGUUUCUCUGGCAGUGUCUUAGCUGGUUGUUGUGAGGAGUGAGAACGAAGCAAUCAGCAAGUAUACUGCCGCAGAAAUUCUUCGCAAUAAGAGGCCCCGGAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAUGGAAGCGGCUGCU- U- C -| A GUGAGGAG
GUGGG GUUUCU UGGCAGUGU CUU GCUGGUUGUU \
CGCUU UAAAGA GCCGUCAUA GAA CGACUAACGA U
UAAGGCCCCGGAGAAUAA CU C U^ - AGCAAGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mal-Mir-34-P1_5p |
mirBase accession | None |
Sequence |
0- UGGCAGUGUCUUAGCUGGUUGUU -23
Get sequence
|
Star sequence |
Mal-Mir-34-P1_3p* |
mirBase accession | None |
Sequence |
42- CAAUCAGCAAGUAUACUGCCGCA -65
Get sequence
|