Mir-34-P3b

MirGeneDB ID

Cfa-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-449b

Paralogues

Cfa-Mir-34-P1 Cfa-Mir-34-P2a Cfa-Mir-34-P2b Cfa-Mir-34-P3c

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr2: 42542085-42542145 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3c chr2: 42541963-42542024 [-] UCSC Ensembl
Mir-34-P3b chr2: 42542085-42542145 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CAUGAAACGUAGCCGUGACCUGAGUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUUGGGUCAAUCUGGCAGCCACCACUACCCUGCCACUUGCUUCUGGACAAAUUCUUCUCAUUAACA

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Structure

        10          20        30        40        50        60  
CAUGAAACGUAGCCGUGA--| U   U     A     U   U  UUAGC        UUGGG 
                    CC GAG CAGGU GGCAG GUA UG     UGGCUGCU     U
                    GG CUU GUUCA CCGUC CAU AC     ACCGACGG     C
ACAAUUACUCUUCUUAAACA^ U   C     -     C   C  C----        UCUAA 
 .       110       100        90         80            70

Deep sequencing

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Comment

This is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAUUGUUAGCUGGCUGCU -26

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Star sequence

Cfa-Mir-34-P3b_3p*

mirBase accession

MIMAT0034406

Sequence

40- CAGCCACCACUACCCUGCCAC -61

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Proposed targets

TargetScanVert: cfa-miR-449b
miRDB: MIMAT0034406