MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-34-P3b

Family name MIR-34 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-449b
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr1: 178899740-178899801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)		 Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Mir-34-P3d chr1: 178900526-178900583 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UGAGUGCAGAGCUCAUUACCUGCUUUGGGUAGGCAGUGUAGUUUUAGCUGGCUGCUUGCUAUUAACUCCAGCAGUCGCUAAUACUCUGCCACCGGCAGCAGGGAAAGGCAUCAGCCACUGCA
Get precursor sequence
Structure
        10          20        30        40        50        60   
UGAGUGCAGAGCUCAUUA--|     UUG   A     U   GUU     U    GCUUGCUAU 
                    CCUGCU   GGU GGCAG GUA   UUAGC GGCU         \
                    GGACGA   CCA CCGUC CAU   AAUCG CUGA         U
ACGUCACCGACUACGGAAAG^     CGG   -     U   ---     -    CGACCUCAA 
120       110       100         90           80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-34-P3b_5p
mirBase accessionMIMAT0022745
Sequence 
0- AGGCAGUGUAGUUUUAGCUGGCU -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-449b-5p
Star sequence

Xtr-Mir-34-P3b_3p*
mirBase accessionMIMAT0022746
Sequence 
41- CAGUCGCUAAUACUCUGCCAC -62
Get sequence
Proposed targets TargetScanVert: xtr-miR-449b-3p