Mir-34-P3a

MirGeneDB ID

Xtr-Mir-34-P3a

Family name

MIR-34 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-449c

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3b Xtr-Mir-34-P3c Xtr-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr1: 178899500-178899564 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Mir-34-P3d chr1: 178900526-178900583 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

UAAAACAUGUAAUAAAAGUUUGGACCAAUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUUCUGGAAGCUUACAGCUGCUAGCUGCACUCCACAUUGUUUCAUUCUGAGCAGCGUUUGGAUGUG

Get precursor sequence

Structure

        10          20        30        40        50        60    
UAAAACAUGUAAUAAAA--|UU    C     A  C      CUU      U      UGUGUUC 
                   G  UGGA CAAUG GG AGUGCA   GCUAGC GGCUGU       U
                   C  ACUU GUUAC CC UCACGU   CGAUCG UCGACA       G
GUGUAGGUUUGCGACGAGU^UU    U     A  -      ---      -      UUCGAAG 
   120       110       100         90           80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P3a_5p

mirBase accession

MIMAT0022747

Sequence

0- AGGCAGUGCACUUGCUAGCUGGCUGU -26

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449c-5p

Star sequence

Xtr-Mir-34-P3a_3p*

mirBase accession

MIMAT0022748

Sequence

43- CAGCUGCUAGCUGCACUCCACA -65

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449c-3p