MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-34-P3a

Family name MIR-34 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-449c
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr1: 178899500-178899564 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Mir-34-P3d chr1: 178900526-178900583 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UAAAACAUGUAAUAAAAGUUUGGACCAAUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUUCUGGAAGCUUACAGCUGCUAGCUGCACUCCACAUUGUUUCAUUCUGAGCAGCGUUUGGAUGUG
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Structure
        10          20        30        40        50        60    
UAAAACAUGUAAUAAAA--|UU    C     A  C      CUU      U      UGUGUUC 
                   G  UGGA CAAUG GG AGUGCA   GCUAGC GGCUGU       U
                   C  ACUU GUUAC CC UCACGU   CGAUCG UCGACA       G
GUGUAGGUUUGCGACGAGU^UU    U     A  -      ---      -      UUCGAAG 
   120       110       100         90           80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-34-P3a_5p
mirBase accessionMIMAT0022747
Sequence 
0- AGGCAGUGCACUUGCUAGCUGGCUGU -26
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Proposed targets TargetScanVert: xtr-miR-449c-5p
Star sequence

Xtr-Mir-34-P3a_3p*
mirBase accessionMIMAT0022748
Sequence 
43- CAGCUGCUAGCUGCACUCCACA -65
Get sequence
Proposed targets TargetScanVert: xtr-miR-449c-3p