MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-34-P3a

Family name MIR-34 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-34-P1  Cmi-Mir-34-P2a  Cmi-Mir-34-P2b  Cmi-Mir-34-P3b  Cmi-Mir-34-P3c  Cmi-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635876.1: 5893708-5893771 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-4541 KI635876.1: 5850052-5850115 [+] UCSC Ensembl
Mir-34-P3a KI635876.1: 5893708-5893771 [+] UCSC Ensembl
Mir-34-P3b KI635876.1: 5894621-5894682 [+] UCSC Ensembl
Mir-34-P3c KI635876.1: 5894760-5894821 [+] UCSC Ensembl
Mir-34-P3d KI635876.1: 5895211-5895269 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
GAGAAGGAAGCAUGUAGGGAUGUGGUGGUUAGGCAGUGUACUGCUAGCUGGCUGUUGUGUCUGACAGGUUAGCAGCUGCUAGCUACACUCCACACUGCUGCAUCUGAGAGCACUUCAUCAUCAG
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Structure
        10          20        30        40        50        60   
GAGAAGGAAGCAUGUAG--|    UG UG  UA  C      CU      U       GUGUCU 
                   GGAUG  G  GU  GG AGUGUA  GCUAGC GGCUGUU      G
                   UCUAC  C  CA  CC UCACAU  CGAUCG UCGACGA      A
GACUACUACUUCACGAGAG^    GU GU  CA  -      --      -       UUGGAC 
  120       110       100        90           80         70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-34-P3a_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUACUGCUAGCUGGCUGUU -26
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Star sequence

Cmi-Mir-34-P3a_3p*
mirBase accessionNone
Sequence 
42- CAGCUGCUAGCUACACUCCACA -64
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