MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-4541

Family name MIR-4541 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Pma-Mir-4541  Sto-Mir-4541 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635876.1: 5850052-5850115 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4541)		 Mir-4541 KI635876.1: 5850052-5850115 [+] UCSC Ensembl
Mir-34-P3a KI635876.1: 5893708-5893771 [+] UCSC Ensembl
Mir-34-P3b KI635876.1: 5894621-5894682 [+] UCSC Ensembl
Mir-34-P3c KI635876.1: 5894760-5894821 [+] UCSC Ensembl
Mir-34-P3d KI635876.1: 5895211-5895269 [+] UCSC Ensembl
Seed AUAUUUA
Precursor
(pre-Mir +30nt flank)		 
CAAACCAAAAUCAUGCUUACUAUCAAAGUUAGCUGGUCUUUGCUAAAUAUUUGUGUGUGUGUGUAAAUUUCACAUAUUUAGCAUGACUGGCUAGCAUUGCUAAGCAACAACGACUAAACUUCCU
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Structure
        10        20          30        40        50        60  
CAAACCAAAAUCAUGCUUAC--| U   A      UG   UU          U  UGUGUGUG 
                      UA CAA GUUAGC  GUC  UGCUAAAUAU UG        \
                      AU GUU CGAUCG  CAG  ACGAUUUAUA AC        U
UCCUUCAAAUCAGCAACAACGA^ C   A      GU   U-          C  UUUAAAUG 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-4541_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUCUUUGCUAAAUAUUUG -23
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Mature sequence

Cmi-Mir-4541_3p
mirBase accessionNone
Sequence 
42- CAUAUUUAGCAUGACUGGCUAG -64
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