| MirGeneDB ID | Sto-Mir-4541 |
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| Family name |
MIR-4541 (all species) |
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| Species |
Cloudy Catshark (Scyliorhinus torazame) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cmi-Mir-4541
Pma-Mir-4541
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_003427355_STO_add) |
BFAA01014260.1: 23324-23385 [-]
|
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| Seed |
AUAUUUA |
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Precursor
(pre-Mir +30nt flank) |
UUUAAAAACAUCAUGCUUAUUAUGAAAGCUAGCUGGUCCUUGCUAAAUAUCCGUGUAUGUACAAGUUUCACAUAUUUAGCACGACUGGCUAGCUUUGUUGAGCAAGUGCAACUGUAUUUUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUUAAAAACAUCAUGCUUA--| UG UG CU CCGUGUAUGU
UUA AAAGCUAGC GUC UGCUAAAUAU \
AGU UUUCGAUCG CAG ACGAUUUAUA A
UCUUUUAUGUCAACGUGAACG^ UG GU C- CACUUUGAAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Sto-Mir-4541_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGCUGGUCCUUGCUAAAUAUCCG -23
Get sequence
|
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| Mature sequence |
Sto-Mir-4541_3p |
| mirBase accession | None |
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| Sequence |
40- CAUAUUUAGCACGACUGGCUAG -62
Get sequence
|
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