Mir-34-P3a

MirGeneDB ID

Gga-Mir-34-P3a

Family name

MIR-34 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-449c

Paralogues

Gga-Mir-34-P1 Gga-Mir-34-P2a Gga-Mir-34-P2b Gga-Mir-34-P3b Gga-Mir-34-P3c Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

Z: 16704036-16704097 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3d Z: 16702024-16702082 [-] UCSC Ensembl
Mir-34-P3c Z: 16702892-16702949 [-] UCSC Ensembl
Mir-34-P3b Z: 16703052-16703110 [-] UCSC Ensembl
Mir-34-P3a Z: 16704036-16704097 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GCAGCUGAGACGGAGUGGAACGCUGUGGUCUGGCAGUGCGUGUUAGCUGGCUGUUGUCCCAAGGUACCAACAGCUGCUCACGGCACUCCAGACUGCCACGCUCAAGAGCAUUGUGGAAAGGC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCAGCUGAGACGGAGUG--| A  CU UG      C     G   U   U       GUCCCA 
                   GA CG  G  GUCUGG AGUGC UGU AGC GGCUGUU      \
                   CU GC  C  CAGACC UCACG GCA UCG UCGACAA      A
CGGAAAGGUGUUACGAGAA^ C  AC GU      -     -   C   -       CCAUGG 
120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P3a_5p

mirBase accession

MIMAT0007602

Sequence

0- UGGCAGUGCGUGUUAGCUGGCUGUU -25

Get sequence

Proposed targets

TargetScanVert: gga-miR-449c-5p
miRDB: MIMAT0007602

Star sequence

Gga-Mir-34-P3a_3p*

mirBase accession

MIMAT0007603

Sequence

40- CAGCUGCUCACGGCACUCCAGA -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-449c-3p
miRDB: MIMAT0007603