MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-449c
Paralogues Rno-Mir-34-P1  Rno-Mir-34-P2a  Rno-Mir-34-P2b  Rno-Mir-34-P3b  Rno-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Loc-Mir-34-P3a  Mmu-Mir-34-P3a  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ovu-Mir-34  Pbv-Mir-34-P3a  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Sko-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Xbo-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr2: 44896085-44896147 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a chr2: 44896085-44896147 [+] UCSC Ensembl
Mir-34-P3c chr2: 44897616-44897677 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAGGGGACGAAGCGUGGGUGUGUCAGACAGGCAGUGCAUUGCUAGCUGGCUGUUAGAACUUCGUCCCAACAGUGGCUAGCUGCACUACCCUCUGCUGCACUUAGAAGCAUGCAAAGACGUG
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Structure
        10          20        30        40        50        60   
CAUAGGGGACGAAGCGU--|      U    CA  C      UU        G     AGAACU 
                   GGGUGUG CAGA  GG AGUGCA  GCUAGCUG CUGUU      \
                   UUCACGU GUCU  CC UCACGU  CGAUCGGU GACAA      U
GUGCAGAAACGUACGAAGA^      C    C-  A      --        -     CCCUGC 
 120       110       100         90          80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-34-P3a_5p
mirBase accessionMIMAT0017803
Sequence 
0- AGGCAGUGCAUUGCUAGCUGGCUGUU -26
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Proposed targets TargetScanVert: rno-miR-449c-5p
miRDB: MIMAT0017803
Star sequence

Rno-Mir-34-P3a_3p*
mirBase accessionMIMAT0017804
Sequence 
41- CAGUGGCUAGCUGCACUACCCU -63
Get sequence
Proposed targets TargetScanVert: rno-miR-449c-3p
miRDB: MIMAT0017804